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Affymetrix expression dataset as used in Stransky et al. 2006. 8555 U95A/Av2 probe sets - 57 bladder tumor samples. MAS5.0 normalization. | "> echo "Expression dataset.csv.gz" ;?> | |
Affymetrix raw files (.CEL, .CHP and .EXP) and clinical parameters for the expression dataset from Stransky et al. 2006. 57 bladder tumor samples and 5 normal urothelium samples. These data can also be found on ArrayExpress with accession number E-TABM-147 | "> echo "Affymetrix_data_62_bladder_samples.tar.bz2" ; ?> | |
CGH dataset for 57 bladder tumor samples, as used in Stransky et al. 2006. The file contains log2ratio, GNL status (Gain/-1, Normal/0 or Loss/1) and outlier status for all 2385 BAC clones. Genomic positions are given according to the may 2004 freeze of the UCSC Genome Reference Sequence. |
"> echo "CGH dataset.csv.gz" ; ?> |
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Raw CGH dataset (Sproc files) for 57 bladder tumor samples. All sproc.txt files correspond to sproc output for each CGH slide. Clone names and positions on the slide are listed in HA20_spotclone_Jul03_v1_1.txt. Correspondence with sample names can be done with the file filenames_samples.csv. Clinical data is included in the file Clinical_parameters.csv. |
"> echo "CGH_raw_data.tar.bz2" ; ?> |
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