The Institut Curie dataset repository

The Institut Curie public dataset repository

This site offers an access to the data released by researchers from the Institut Curie. Supplementary data (such as tables, figures, ...) and/or raw data sets (MIAME compliant to Brazma et al., Nature Genetics, 2001) are available from here.
It includes :

Group	Group Leader	Short Title	Data type	Species	Material
Université Paris Descartes, Centre Interdisciplinaire Chimie Biologie-Paris, Inserm UMRS1007, Paris, France	Eliette Bonnefoy	Genome-wide identification of genic and intergenic neuronal DNA regions bound by Tau protein under physiological and stress conditions	Microarray	Mouse	ChIP-on-chip
Institut Curie, Centre de recherche, UMR 3666, PSL Research University, Membrane Dynamics and Mechanics of Intracellular Signaling Laboratory, 75248 Paris cedex 05, France	Christophe Lamaze	EHD2 is a mechanotransducer connecting caveolae dynamics with gene transcription	Microarray	Human	Gene_2.1_ST_Array_Plate
Gustave Roussy, INSERM Unit 981, Breast Cancer Committee and Department of Cancer Medicine, Villejuif, France	Monica Arnedos	Modulation of Rb phosphorylation and antiproliferative response to palbociclib. The Preoperative Palbociclib (POP) randomized trial	Microarray	Human	SNPSs arrays hGene
Institut Curie, Centre de recherche, UMR 3348 CNRS	Mounira Amor-Guéret	Genome-wide shRNA-based synthetic interaction screen in Bloom syndrome cells	Sequencing	Human	HiSeq Illumina
Institut Curie, CNRS UMR144	Marina Glukhova	Gene and miR expression of beta-catenin induced mammary tumors	Microarray	Mouse	Affymetrix Mouse Genome 2.1ST, (13 samples) and Nanostring microarrays, (12 samples)
Institut Curie, Service de Génétique et de Pathologie	Jérome Couturier	Whole-genome Profiling Helps to Prognostically Classify Phyllodes Tumours of the Breast	Microarray	Human	Illumina CNV370 BeadChip
Institut Curie, Département Medical d'Oncologie, Université Paris Descartes, France	Jean-Yves Pierga	Implementing whole genome array for clinical use in academic centers: A randomized trial comparing neoadjuvant standard chemotherapy to genomic-driven chemotherapy in operable breast cancer (REMAGUS04 trial)	Microarray	Human
Institut Curie, CNRS UMR 144 and INSERM U900, Hôpital Henri Mondor, Département de Pathologie	François Radvanyi, Andrei Zinovyev & Yves Allory	Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals new insights into luminal and basal subtypes	pathological sections of tumor samples	Human	png and pdf images
Institut Curie, Département de biopathologie	Xavier Sastre	Histo-Genomic Stratification of Ovarian Carcinomas	Microarray	Human	Affymetrix HG_U133Plus2 and Affymetrix Cytoscan HD
Institut Curie, Département de Recherche Translationnelle	Sergio Roman-Roman	Uveal melanoma; BAP1; Everolimus; mTOR; Cell lines; Patients-derived tumor xenografts (Mol. Onc 2014 DOI: 10.1016/j.molonc.2014.06.004)	Microarray	Human	?
Institut Curie, Inserm UMR3244	J. Arturo Londoño-Vallejo	Genome-wide eNOS-DNA association in Prostate Cancer Cells	Microarray	Human	EXIQON LNA-microarrays (dual color)
Institut Curie, Inserm U900/CNRS UMR144 & RPPA platform	Philippe Hupé & Leanne de Koning	Normacurve: normalization of RPPA data	RPPA	Human & mouse	Custom protein arrays
Institut Curie, CNRS UMR 144	Bruno Goud & François Radvanyi	Deregulation of Rab and Rab effector genes in bladder cancer progression	Microarray	Human	Affymetrix HG_U95A/Av2, HG_U133Plus2 and HG_Exon microarrays
Institut Curie, INSERM Unité 830 - Génétique et Biologie des cancers	Olivier Delattre	Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia	Microarray	Mouse	Affymetrix HG_U133Plus2 microarrays
Institut Curie, INSERM Unité 830 & Département d'oncologie pédiatrique	Olivier Delattre	Rare ALK germline mutations in neuroblastoma	Microarray	Human	BACs arrays Institut Curie (n=3) and Oligo arrays Nimbelgen 4x72k (n=6)
Institut Curie, Centre de recherche, CNRS UMR3215,INSERM U934	Edith Heard	Sequencing platform and protocol influence the results obtained in small-RNA sequencing	Sequencing	Mouse	Illumina, SOLiD and 454 small-RNA sequencing
Institut Curie, Centre de recherche, UMR 3348 CNRS	Mounira Amor-Guéret	Pyrimidine pool imbalance in Bloom syndrome (Nature Communications, 28 June 2011)	Microarray	Human	Affymetrix HG_U133Plus2 microarrays
Institut Curie, Département de Recherche Translationnelle	Elisabetta Marangoni & David Gentien	Molecular profiling of patient-derived breast cancer xenografts	Microarray	Human	Affymetrix HG_U133Plus2 and Affymetrix MG_MOE430 2.0 microarrays
Institut Curie, Département Biologie des Tumeurs	Xavier Sastre	Genomic alterations at HPV insertion sites	Microarray	Human	SNPs arrays (SNP Affymetrix GeneChip Mapping Sty 250K Set, n=42 ; Affymetrix Human Genome-Wide SNP6.0, Set, n=2)
Institut Curie, Département de Transfert	Thierry Dubois	PTEN alterations and PI3K pathway in basal (Breast Cancer Research, 2008)	Microarray	Human	23 Affymetrix HG_U133Plus2 microarrays
Institut Curie, INSERM Unité 830	Olivier Delattre	Characterization of Amplicons in Neuroblastoma (Genes Chromosomes Cancer. 2008 Jun 13.)	Microarray	Human	BACs/PACs arrays (n=65) and SNPs arrays (SNP Affymetrix GeneChip Mapping 100K Set, n=27)
Institut Curie, CNRS UMR 2027 & UMR 7147	Dietrich Averbeck & Alain Nicolas	Specific transcriptional responses induced by 8-methoxypsoralen and UVA in yeast (FEMS Yeast Research, 2007)	Microarray	Yeast	Microarray slides
Institut Curie, CNRS UMR 144	François Radvanyi	Regional copy number-independent deregulation of transcription in cancer (Nature Genetics, 2006)	Microarray	Human bladder carcinomas	57 Affymetrix U95A microarrays, 57 Human CGH BAC arrays
Institut Curie, CNRS UMR 144	François Radvanyi	Visualizing chromosomes as transcriptome correlation maps (Cancer Research, 2005)	Microarray	Human breast carcinomas	130 Affymetrix U133AB microarrays
Institut Curie, INSERM Unité 509, CNRS UMR 144, Bioinformatics group	Olivier Delattre	Preferential occurrence of chromosome breakpoints within early replicating regions in neuroblastoma (Cell Cycle, accepted, 2005)	Microarray	Human	Array-CGH : 96 (Institut Curie)
Institut Curie, CNRS UMR 2027	Marie Dutreix	Haploid-specific transcriptional response to irradiation (Nucleic Acids Research, 2005)	Microarray	Yeast	Microarray slides
Institut Curie, CNRS UMR 144	François Radvanyi	The FGFR 2B induces growth inhibition of human bladder cells (Oncogene, 2004)	Microarray	Human cell lines	Nylon filters : 8 (home-made)
Institut Curie, CNRS UMR 2027	Marie Dutreix	Biological detection of low radiation doses (Nucleic Acids Research, 2004)	Microarray	Yeast	Microarray slides : 33 (Corning and Hitachi)

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